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HLA » Haplotype Frequency Search
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| Line | Haplotype | Population | Frequency (%) | Sample Size | Location |
|---|---|---|---|---|---|
| 1 | A*68:01-B*39:09-DRB1*08:02-DQB1*04:02 | Chile Mapuche | 6.15 | 66 | 37_48_S_73_23_W |
| 2 | A*02-B*39-DRB1*08:02-DQB1*04:02 | Bolivia La Paz Aymaras | 3.43 | 87 | 16_29_S_68_7_W |
| 3 | A*68:01-B*39:01-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Tlalpan | 1.52 | 330 | 19_25_N_99_8_W |
| 4 | B*39:05-C*07:02-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Mestizo population | 1.40 | 143 | 19_25_N_99_7_W |
| 5 | A*31-B*39-DRB1*08:02-DQB1*04:02 | Bolivia La Paz Aymaras | 1.24 | 87 | 16_29_S_68_7_W |
| 6 | A*31:01-B*39:01-DRB1*08:02-DQB1*04:02 | Mexico Veracruz Xalapa | 1.19 | 84 | 19_32_N_96_55_W |
| 7 | B*39:05-C*07:02-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Mestizo pop 2 | 1.07 | 234 | 19_26_N_99_8_W |
| 8 | A*68:01-B*39:05-C*03:04-DRB1*08:02-DQA1*04:01-DQB1*04:02 | Mexico Chichen Itza Maya (prehispanic) | 1.06 | 47 | 20_40_N_88_34_W |
| 9 | A*02-B*39-DRB1*08:02-DQB1*04:02 | Bolivia Quechua | 0.86 | 69 | 16_30_S_68_9_W |
| 10 | A*02:01-B*39:01-DRB1*08:02-DQB1*04:02 | Chile Mapuche | 0.77 | 66 | 37_48_S_73_23_W |
| 11 | A*33:01-B*39:01-DRB1*08:02-DQB1*04:02 | Chile Mapuche | 0.77 | 66 | 37_48_S_73_23_W |
| 12 | A*68:03-B*39:05-C*07:02-DRB1*08:02-DQA1*04:01-DQB1*04:02 | Mexico Tixcacaltuyub Maya | 0.75 | 67 | 20_29_N_88_54_W |
| 13 | A*01:01:01-B*39:01:01-C*07:01:01-DRB1*08:02:01-DQB1*04:02 | Mexico Hidalgo Mezquital Valley/ Otomi | 0.69 | 72 | 20_28_N_99_13_W |
| 14 | A*02:01:01-B*39:01:01-C*07:01:01-DRB1*08:02:01-DQB1*04:02 | Mexico Hidalgo Mezquital Valley/ Otomi | 0.69 | 72 | 20_28_N_99_13_W |
| 15 | A*24:02:01-B*39:01:01-C*07:01:01-DRB1*08:02:01-DQB1*04:02 | Mexico Hidalgo Mezquital Valley/ Otomi | 0.69 | 72 | 20_28_N_99_13_W |
| 16 | A*24:02:01-B*39:01:01-C*08:01:01-DRB1*08:02:01-DQB1*04:02 | Mexico Hidalgo Mezquital Valley/ Otomi | 0.69 | 72 | 20_28_N_99_13_W |
| 17 | A*31:01:02-B*39:06:01-C*07:01:01-DRB1*08:02:01-DQB1*04:02 | Mexico Hidalgo Mezquital Valley/ Otomi | 0.69 | 72 | 20_28_N_99_13_W |
| 18 | A*68:01:01-B*39:01:01-C*07:01:01-DRB1*08:02:01-DQB1*04:02 | Mexico Hidalgo Mezquital Valley/ Otomi | 0.69 | 72 | 20_28_N_99_13_W |
| 19 | A*68:01:01-B*39:02:01-C*07:01:01-DRB1*08:02:01-DQB1*04:02 | Mexico Hidalgo Mezquital Valley/ Otomi | 0.69 | 72 | 20_28_N_99_13_W |
| 20 | A*68-B*39-DRB1*08:02-DQB1*04:02 | Bolivia La Paz Aymaras | 0.69 | 87 | 16_29_S_68_7_W |
| 21 | A*68:01-B*39:01-DRB1*08:02-DQB1*04:02 | Mexico Veracruz Xalapa | 0.60 | 84 | 19_32_N_96_55_W |
| 22 | A*36-B*39:01-DRB1*08:02-DQB1*04:02 | Mexico Chihuahua Chihuahua City Pop 2 | 0.57 | 88 | 28_48_N_106_26_W |
| 23 | A*24:02-B*39:05-C*07:02-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPA1*01:03-DPB1*04:02 | Mexico Chiapas Lacandon Mayans | 0.46 | 218 | 16_54_N_92_5_W |
| 24 | A*68:03-B*39:05-C*07:02-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPA1*01:03-DPB1*04:02 | Mexico Chiapas Lacandon Mayans | 0.46 | 218 | 16_54_N_92_5_W |
| 25 | A*24:02-B*39:01-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Tlalpan | 0.45 | 330 | 19_25_N_99_8_W |
| 26 | A*68:01:02-B*39:08-C*07:02:01-DRB1*08:02:01-DQB1*04:02:01 | Costa Rica Central Valley Mestizo (G) | 0.45 | 221 | 9_55_N_84_5_W |
| 27 | B*39:01-C*07:02-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Mestizo pop 2 | 0.43 | 234 | 19_26_N_99_8_W |
| 28 | B*39:02-C*07:02-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Mestizo pop 2 | 0.43 | 234 | 19_26_N_99_8_W |
| 29 | A*24:02-B*39:05-C*07:02-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Mestizo pop 2 | 0.43 | 234 | 19_26_N_99_8_W |
| 30 | A*68:01-B*39:01-C*07:02-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Mestizo pop 2 | 0.43 | 234 | 19_26_N_99_8_W |
| 31 | A*01:01-B*39:05-C*07:02-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Mestizo population | 0.35 | 143 | 19_25_N_99_7_W |
| 32 | A*02:01-B*39:05-C*07:02-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Mestizo population | 0.35 | 143 | 19_25_N_99_7_W |
| 33 | A*02:06-B*39:05-C*07:02-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Mestizo population | 0.35 | 143 | 19_25_N_99_7_W |
| 34 | A*24:02-B*39:06-C*07:02-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Mestizo population | 0.35 | 143 | 19_25_N_99_7_W |
| 35 | A*68:01-B*39:01-C*07:02-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Mestizo population | 0.35 | 143 | 19_25_N_99_7_W |
| 36 | A*68:03-B*39:05-C*07:02-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Mestizo population | 0.35 | 143 | 19_25_N_99_7_W |
| 37 | A*68:03-B*39:08-C*07:17-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Mestizo population | 0.35 | 143 | 19_25_N_99_7_W |
| 38 | B*39:01-C*07:02-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Mestizo population | 0.35 | 143 | 19_25_N_99_7_W |
| 39 | B*39:06-C*07:02-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Mestizo population | 0.35 | 143 | 19_25_N_99_7_W |
| 40 | B*39:08-C*07:17-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Mestizo population | 0.35 | 143 | 19_25_N_99_7_W |
| 41 | A*02:01-B*39:01-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Tlalpan | 0.30 | 330 | 19_25_N_99_8_W |
| 42 | A*02:22-B*39:05-C*07:02-DRB1*08:02-DQB1*04:02 | Colombia Bogotá Cord Blood | 0.27 | 1,463 | 4_39_N_73_52_W |
| 43 | A*02:06-B*39:08-C*07:02-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPA1*01:03-DPB1*04:02 | Mexico Chiapas Lacandon Mayans | 0.23 | 218 | 16_54_N_92_5_W |
| 44 | A*31:01-B*39:05-C*04:01-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPA1*01:03-DPB1*04:02 | Mexico Chiapas Lacandon Mayans | 0.23 | 218 | 16_54_N_92_5_W |
| 45 | A*68:05-B*39:02-C*03:04-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPA1*01:03-DPB1*02:01 | Mexico Chiapas Lacandon Mayans | 0.23 | 218 | 16_54_N_92_5_W |
| 46 | A*68:05-B*39:05-C*07:02-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPA1*01:03-DPB1*04:02 | Mexico Chiapas Lacandon Mayans | 0.23 | 218 | 16_54_N_92_5_W |
| 47 | A*68:03-B*39:08-C*07:17-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPB1*03:01 | Nicaragua Managua | 0.22 | 339 | 12_7_N_86_10_W |
| 48 | A*02:06-B*39:05-C*07:02-DRB1*08:02-DQB1*04:02 | USA NMDP Hawaiian or other Pacific Islander | 0.21 | 11,499 | 38_45_N_76_6_W |
| 49 | A*68:01-B*39:05-C*07:02-DRB1*08:02-DQB1*04:02 | Colombia Bogotá Cord Blood | 0.16 | 1,463 | 4_39_N_73_52_W |
| 50 | A*02-B*39-DRB1*08:02-DQA1*04:01-DQB1*04:02 | Brazil Paraná Caucasian | 0.16 | 641 | 23_25_S_51_55_W |
| 51 | A*31-B*39-DRB1*08:02-DQA1*04:01-DQB1*04:02 | Brazil Paraná Caucasian | 0.16 | 641 | 23_25_S_51_55_W |
| 52 | A*68:05-B*39:02-DRB1*08:02-DQB1*04:02 | Mexico Mexico City Tlalpan | 0.15 | 330 | 19_25_N_99_8_W |
| 53 | A*02:01-B*39:05-C*07:02-DRB1*08:02-DQB1*04:02 | Colombia Bogotá Cord Blood | 0.11 | 1,463 | 4_39_N_73_52_W |
| 54 | A*24:02-B*39:06-C*07:02-DRB1*08:02-DQB1*04:02 | USA Hispanic pop 2 | 0.10 | 1,999 | 44_58_N_93_15_W |
| 55 | A*11-B*39-DRB1*08:02-DQA1*04:01-DQB1*04:02 | Brazil Paraná Caucasian | 0.08 | 641 | 23_25_S_51_55_W |
| 56 | A*24-B*39-DRB1*08:02-DQA1*04:01-DQB1*04:02 | Brazil Paraná Caucasian | 0.08 | 641 | 23_25_S_51_55_W |
| 57 | A*29-B*39-DRB1*08:02-DQA1*04:01-DQB1*04:02 | Brazil Paraná Caucasian | 0.08 | 641 | 23_25_S_51_55_W |
| 58 | A*02:06-B*39:01-C*07:02-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPA1*01:03-DPB1*02:01 | Japan pop 17 | 0.07 | 3,078 | 37_36_N_138_2_E |
| 59 | A*02:06-B*39:01-C*07:02-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPA1*02:02-DPB1*05:01 | Japan pop 17 | 0.07 | 3,078 | 37_36_N_138_2_E |
| 60 | A*31:01-B*39:03-C*07:02-DRB1*08:02-DQB1*04:02 | USA Hispanic pop 2 | 0.05 | 1,999 | 44_58_N_93_15_W |
| 61 | A*24:03-B*39:05-C*07:02-DRB1*08:02-DQB1*04:02 | Colombia Bogotá Cord Blood | 0.04 | 1,463 | 4_39_N_73_52_W |
| 62 | A*02:01-B*39:11-C*07:02-DRB1*08:02-DQB1*04:02 | Colombia Bogotá Cord Blood | 0.04 | 1,463 | 4_39_N_73_52_W |
| 63 | A*24:14-B*39:08-C*07:02-DRB1*08:02-DQB1*04:02 | Colombia Bogotá Cord Blood | 0.03 | 1,463 | 4_39_N_73_52_W |
| 64 | A*03:01-B*39:05-C*07:02-DRB1*08:02-DQB1*04:02 | Colombia Bogotá Cord Blood | 0.03 | 1,463 | 4_39_N_73_52_W |
| 65 | A*02:06-B*39:01-C*07:02-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPA1*01:03-DPB1*03:01 | Japan pop 17 | 0.03 | 3,078 | 37_36_N_138_2_E |
| 66 | A*02:06-B*39:01-C*07:02-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPA1*01:03-DPB1*06:01 | Japan pop 17 | 0.03 | 3,078 | 37_36_N_138_2_E |
| 67 | A*02:28-B*39:01-C*07:02-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPA1*02:02-DPB1*05:01 | Japan pop 17 | 0.03 | 3,078 | 37_36_N_138_2_E |
| 68 | A*26:01-B*39:01-C*07:02-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPA1*02:01-DPB1*05:01 | Japan pop 17 | 0.03 | 3,078 | 37_36_N_138_2_E |
| 69 | A*31:01-B*39:01-C*07:02-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPA1*02:02-DPB1*05:01 | Japan pop 17 | 0.03 | 3,078 | 37_36_N_138_2_E |
| 70 | A*26:01:01-B*39:01:01-C*07:02:01-DRB1*08:02:01-DQB1*04:02:01 | China Zhejiang Han | 0.03 | 1,734 | 27_2_N_118_1_E |
| 71 | A*02:01-B*39:01-C*07:02-DRB1*08:02-DQB1*04:02 | USA Hispanic pop 2 | 0.02 | 1,999 | 44_58_N_93_15_W |
| 72 | A*02:01-B*39:13-C*07:02-DRB1*08:02-DQB1*04:02 | USA Hispanic pop 2 | 0.01 | 1,999 | 44_58_N_93_15_W |
| 73 | A*02:06-B*39:01-C*07:02-DRB1*08:02-DQB1*04:02 | USA Hispanic pop 2 | 0.01 | 1,999 | 44_58_N_93_15_W |
| 74 | A*02:11-B*39:13-C*07:02-DRB1*08:02-DQB1*04:02 | USA Hispanic pop 2 | 0.01 | 1,999 | 44_58_N_93_15_W |
| 75 | A*25:01-B*39:01-C*07:02-DRB1*08:02-DQB1*04:02 | USA Hispanic pop 2 | 0.01 | 1,999 | 44_58_N_93_15_W |
| 76 | A*32:01:01-B*39:01:01-C*07:02:01-DRB1*08:02:01-DQB1*04:02:01 | Poland BMR | 0.01 | 23,595 | 52_0_N_19_22_E |
| 77 | A*03:01-B*39:01-C*12:03-DRB1*08:02-DQB1*04:02 | India South UCBB | 0.00 | 11,446 | 13_6_N_80_8_E |
Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.
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